gts - the genome transformation subprograms command line tool
usage: gts [--version] [-h | --help] command [args]
GTS provides basic manipulation utilities for genome flatfiles. The command consists of a number of subcommands listed in the COMMANDS section.
gts-annotate(1)Merge features from a feature list file into a sequence.
gts-cache(1)Manage gts cache files.
gts-clear(1)Remove all features from the sequence (excluding source features).
gts-complement(1)Compute the complement of the given sequence.
gts-define(1)Define a new feature.
gts-delete(1)Delete a region of the given sequence(s).
gts-extract(1)Extract the sequences referenced by the features.
gts-infix(1)Infix input sequence(s) into the host sequence(s).
gts-insert(1)Insert a sequence into another sequence(s).
gts-join(1)Join the sequences contained in the files.
gts-length(1)Report the length of the sequence(s).
gts-pick(1)Pick sequence(s) from multiple sequences.
gts-query(1)Query information from the given sequence.
gts-repair(1)Repair fragmented features.
gts-reverse(1)Reverse order of the given sequence(s).
gts-rotate(1)Shift the coordinates of a circular sequence.
gts-search(1)Search for a subsequence and annotate its results.
gts-select(1)Select features using the given feature selector(s).
gts-sort(1)Sort the list of sequences.
gts-split(1)Split the sequence at the provided locations.
gts-summary(1)Report a brief summary of the sequence(s).
gts currently has no known bugs.
gts is written and maintained by Kotone Itaya.
gts-annotate(1), gts-cache(1), gts-clear(1), gts-complement(1), gts-define(1), gts-delete(1), gts-extract(1), gts-infix(1), gts-insert(1), gts-join(1), gts-length(1), gts-pick(1), gts-query(1), gts-repair(1), gts-reverse(1), gts-rotate(1), gts-search(1), gts-select(1), gts-sort(1), gts-split(1), gts-summary(1), gts-locator(7), gts-modifier(7), gts-selector(7), gts-seqin(7), gts-seqout(7)