1. gts-complement(1)
  2. gts-complement(1)

NAME

gts-complement - compute the complement of the given sequence(s)

SYNOPSIS

gts-complement [--version] [-h | --help] [args] seqin

DESCRIPTION

gts-complement takes a single sequence input and return the complemented sequence as output. If the sequence input is ommited, standard input will be read instead. Any features present in the sequence will be relocated to the complement strand. This command will not reverse the sequence. To obtain the reversed sequence, use gts-reverse(1).

OPTIONS

<seqin>

Input sequence file (may be omitted if standard input is provided). See gts-seqin(7) for a list of currently supported list of sequence formats.

-F <format>, --format=<format>

Output file format (defaults to same as input). See gts-seqout(7) for a list of currently supported list of sequence formats. The format specified with this option will override the file type detection from the output filename.

--no-cache

Do not use or create cache. See gts-cache(7) for details.

-o <output>, --output=<output>

Output sequence file (specifying - will force standard output). The output file format will be automatically detected from the filename if none is specified with the -F or --format option.

BUGS

gts-complement currently has no known bugs.

AUTHORS

gts-complement is written and maintained by Kotone Itaya.

SEE ALSO

gts(1), gts-reverse(1), gts-seqin(7), gts-seqout(7)

  1. October 2020
  2. gts-complement(1)