gts-split - split the sequence at the provided locations
gts-split [--version] [-h | --help] [args] locator seqin
gts-split takes a single sequence input and splits the sequences into
fragments at the specified locations. If the sequence input is ommited,
standard input will be read instead. The location to be split is specified
using a locator.
A locator consists of a location specifier and a modifier. A location specifier
may be a modifier, a point location, a range location, or a selector.
The syntax for a locator is [specifier][@modifier]. See gts-locator(7) for a
more in-depth explanation of a locator. Refer to the EXAMPLES for some examples
to get started.
<locator>A locator string ([specifier][@modifier]). See gts-locator(7) for more
details.
<seqin>Input sequence file (may be omitted if standard input is provided). See gts-seqin(7) for a list of currently supported list of sequence formats.
-F <format>, --format=<format>Output file format (defaults to same as input). See gts-seqout(7) for a list of currently supported list of sequence formats. The format specified with this option will override the file type detection from the output filename.
--no-cacheDo not use or create cache. See gts-cache(7) for details.
-o <output>, --output=<output>Output sequence file (specifying - will force standard output). The
output file format will be automatically detected from the filename if none
is specified with the -F or --format option.
Split the sequence at 100th base:
$ gts split 100 <seqin>
Split the sequence before each CDS feature:
$ gts split CDS@^ <seqin>
gts-split currently has no known bugs.
gts-split is written and maintained by Kotone Itaya.
gts(1), gts-join(1), gts-locator(7), gts-modifier(7), gts-selector(7), gts-seqin(7), gts-seqout(7)