1. gts-clear(1)
3. gts-clear(1)

NAME

gts-clear - remove all features from the sequence (excluding source features)

SYNOPSIS

gts-clear [--version] [-h | --help] [args] seqin

DESCRIPTION

gts-clear takes a single sequence file input and strips off all features except for the source features which are mandatory in GenBank. If the sequence input is ommited, standard input will be read instead. This command is equivalent to running gts select source <seqin>.

OPTIONS

<seqin>

Input sequence file (may be omitted if standard input is provided). See gts-seqin(7) for a list of currently supported list of sequence formats.

-F <format>, --format=<format>

Output file format (defaults to same as input). See gts-seqout(7) for a list of currently supported list of sequence formats. The format specified with this option will override the file type detection from the output filename.

--no-cache

Do not use or create cache. See gts-cache(7) for details.

-o <output>, --output=<output>

Output sequence file (specifying - will force standard output). The output file format will be automatically detected from the filename if none is specified with the -F or --format option.

BUGS

gts-clear currently has no known bugs.

AUTHORS

gts-clear is written and maintained by Kotone Itaya.

SEE ALSO

gts(1), gts-seqin(7), gts-seqout(7)

2. October 2020
3. gts-clear(1)