1. gts-selector(7)
  2. gts-selector(7)

NAME

gts-selector

gts-selector(7) -- patterns to select sequence features

SYNOPSIS

[feature_key][/[qualifier1][=regexp1]][/[qualifier2][=regexp2]]...

DESCRIPTION

gts-selectors are patterns for selecting sequence features that match the given selector. A selector consists of a single feature key and/or multiple qualifier matchers. A feature key must currently be a perfect match (case sensitive) and if omitted all feature keys will match. A qualifier matcher has two parts: a qualifier name and a regular expression delimited by the = sign. The qualifier name must currently be a perfect match (case sensitive) and if omitted all qualifier names will match. The regular expression will be tested against the contents of the qualifier value. If omitted, any features that has the qualifier with the given qualifier name will match.

EXAMPLES

Select all gene features:

gene

Select all CDS features that produce a DNA-binding product:

CDS/product=DNA-binding

Select all features with locus_tag of b0001:

/locus_tag=b0001

Select all features with the qualifier translation:

/translation

Select all features with a qualifier value matching recombinase

/=recombinase

SEE ALSO

gts(1), gts-select(1), gts-locator(7)

  1. October 2020
  2. gts-selector(7)